PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478784
Common NameARALYDRAFT_478784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 508aa    MW: 56158.1 Da    PI: 8.2947
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478784genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0597119123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++C+k F r  nL+ H r H
   478784  97 FVCEICNKGFQRDQNLQLHRRGH 119
              89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-596119No hitNo description
Gene3DG3DSA:3.30.160.601.7E-596119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94997119IPR007087Zinc finger, C2H2
PfamPF121718.1E-597119IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01797119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355240139169IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.28E-5169194No hitNo description
SMARTSM00355220174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNKDMLLHQH HQPQQDENMS NLTSASGDQA SVSSGNITEA SGSNYFPHHQ QLQEQQQQFF  60
VPDSQPQKKR RNQPGNPDPD SEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKQRSN KEVIRKKVYV CPEASCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KKYAVHSDCK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCEALAEETA REVVIPQNQN  240
NQPNPLLIHQ SSSHPHPHHH QTQPNINVSS SSSSSHNHNI INSLHFDTNN GTNNSNSSNN  300
HLHTFPMKKE QQSNDHIMNY HHSIPPWLAP QPHDLTSSNP NPSNGGGGGS LFSLASPAMS  360
ATALLQKAAQ MGSTKTPPLP PTTDYERSTR NNNLTTTMAA MMTSPSGFIS SNNNNQVLFQ  420
DYNASGFDHH GGEEAFDDTF GGFLRTSEAT TAAGSEKSKS GGGEGLTRDF LGLRPLMSHN  480
EILSFAGLGN CINSSASDQL HPKPWQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882851.10.0hypothetical protein ARALYDRAFT_478784
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLD7L2860.0D7L286_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.3__1485__AT3G13810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11